massdatabase is a part of tidymass

massdatabase is an R package that operates the online public databases and combines with other tools for streamlined compound annotation and pathway enrichment analysis. massDatabase is a flexible, simple, and powerful tool that can be installed on all platforms, allowing the users to leverage all the online public databases for biological function mining.

# Installation

You can install massdatabase from GitLab

if(!require(remotes)){
install.packages("remotes")
}
remotes::install_gitlab("jaspershen/massdatabase")

or Github

remotes::install_github("tidymass/massdatabase")

# Usage

Please see the Help documents page to get the instruction of massDatabase.

## Need help?

If you have any questions about massdatabase, please don’t hesitate to email me ().

# Citation

If you use massdatabase in your publications, please cite this paper:

1. massDatabase: utilities for the operation of the public compound and pathway database. Web Link

2. Shen, X., Yan, H., Wang, C. et al. TidyMass an object-oriented reproducible analysis framework for LC–MS data. Nat Commun 13, 4365 (2022). Web Link.

Thanks very much!