massDatabase

massdatabase is a part of tidymass

About

massdatabase is an R package that operates the online public databases and combines with other tools for streamlined compound annotation and pathway enrichment analysis. massDatabase is a flexible, simple, and powerful tool that can be installed on all platforms, allowing the users to leverage all the online public databases for biological function mining.

Installation

You can install massdatabase from GitLab

if(!require(remotes)){
install.packages("remotes")
}
remotes::install_gitlab("jaspershen/massdatabase")

or Github

remotes::install_github("tidymass/massdatabase")

Usage

Please see the Help documents page to get the instruction of massDatabase.

Need help?

If you have any questions about massdatabase, please don’t hesitate to email me ().

shenzutao1990

Twitter

M339, Alway Buidling, Cooper Lane, Palo Alto, CA 94304

Citation

If you use massdatabase in your publications, please cite this paper:

  1. massDatabase: utilities for the operation of the public compound and pathway database. Web Link

  2. Shen, X., Yan, H., Wang, C. et al. TidyMass an object-oriented reproducible analysis framework for LC–MS data. Nat Commun 13, 4365 (2022). Web Link.

Thanks very much!