Request one lipid information in LIPIDMAPS

Request one lipid information in LIPIDMAPS

request_lipidmaps_lipid(
  url = "https://www.lipidmaps.org/databases/lmsd",
  lipid_id = "LMFA01030001"
)

Arguments

url

Default is "https://www.lipidmaps.org/databases/lmsd".

lipid_id

lipid id. For example, LMFA01030001

Value

A data frame.

Author

Xiaotao Shen shenxt1990@outlook.com

Examples

request_lipidmaps_lipid(lipid_id = "LMFA01030001")
#>                                                                                                                                                                      Synonyms
#> 2 5Z,8Z,11Z,14Z-icosatetraenoic acid{}AA{}Arachidonate{}cis-5,8,11,14-Eicosatetraenoic acid{}(all-Z)-5,8,11,14-Eicosatetraenoic acid{}all-cis-5,8,11,14-Eicosatetraenoic acid
#>        Common_Name                     Systematic_Name        LM_ID Status
#> 2 Arachidonic acid 5Z,8Z,11Z,14Z-eicosatetraenoic acid LMFA01030001 Active
#>   Exact_Mass  Formula  Abbrev         Category
#> 2   304.2402 C20H32O2 FA 20:4 Fatty Acyls [FA]
#>                          Main.Class                        Sub.Class
#> 2 Fatty Acids and Conjugates [FA01] Unsaturated fatty acids [FA0103]
#>                      InChiKey
#> 2 YZXBAPSDXZZRGB-DOFZRALJSA-N
#>                                                                                                                                                            InChi
#> 2 InChI=1S/C20H32O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20(21)22/h6-7,9-10,12-13,15-16H,2-5,8,11,14,17-19H2,1H3,(H,21,22)/b7-6-,10-9-,13-12-,16-15-
#>                                        SMILES         Curated.from
#> 2 C(O)(=O)CCC/C=C\\C/C=C\\C/C=C\\C/C=C\\CCCCC Homo sapiens (#9606)
#>   NCBI.taxonomy.class        Wikipedia KEGG.ID     HMDB.ID CHEBI.ID
#> 2   Mammalia (#40674) Arachidonic acid  C00219 HMDB0001043    15843
#>   LIPIDBANK.ID PubChem.CID PlantFA.ID SwissLipids.ID Cayman.ID  NA.
#> 2      DFA0213      444899      10144  SLM:000000296  10007268 <NA>
request_lipidmaps_lipid(lipid_id = "LMGL00000140")
#>   Synonyms  Common_Name
#> 2       NA Crasseride 5
#>                                                                                                       Systematic_Name
#> 2 1-O-(1'S,2'S,3'R,4'R,5'S-tetrahydroxycyclopentyl)-2-(14-methyl-pentadecanoyl)-3-(10-methyl-hexadecanyl)-sn-glycerol
#>          LM_ID Status Exact_Mass  Formula Abbrev           Category
#> 2 LMGL00000140 Active   700.5853 C41H80O8     NA Glycerolipids [GL]
#>                   Main.Class Sub.Class                    InChiKey
#> 2 Other Glycerolipids [GL00]      <NA> DPGGHWKQIMRSAT-WUNDXSHJSA-N
#>                                                                                                                                                                                                                             InChi
#> 2 InChI=1S/C41H80O8/c1-5-6-7-22-27-34(4)28-23-18-14-12-16-20-25-30-47-31-35(32-48-41-39(45)37(43)38(44)40(41)46)49-36(42)29-24-19-15-11-9-8-10-13-17-21-26-33(2)3/h33-35,37-41,43-46H,5-32H2,1-4H3/t34?,35-,37+,38+,39-,40-/m0/s1
#>                                                                                                 SMILES
#> 2 C(O[C@@H]1[C@H]([C@@H]([C@H]([C@@H]1O)O)O)O)[C@@]([H])(OC(CCCCCCCCCCCCC(C)C)=O)COCCCCCCCCCC(C)CCCCCC
#>               Curated.from  NCBI.taxonomy.class PubChem.CID    Created.at
#> 2 Pseudoceratina (#283601) Demospongiae (#6042)    10439725 10th Dec 2020
#>      Updated.at
#> 2 10th Dec 2020